PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14880_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 406aa    MW: 46545 Da    PI: 6.6413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14880_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016153176123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 y C+ Cg+ ++++ +Lk+H +  H
  Cotton_A_14880_BGI-A2_v1.0 153 YICGVCGRKCKTNLDLKKHFKQlH 176
                                 89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.2E-673143IPR029060PIN domain-like
PROSITE profilePS5015710.492153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061671.01E-12182307No hitNo description
Gene3DG3DSA:3.40.50.10105.2E-6238294IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNSLCNSLKS LNVNPTFFPT KPELSFSFSF SPISAPPFKS KSSPTRCRLT VKADANAVEI  60
DMVRNKQGVY APKQKKVVVL WDLDNKPPRG PPYEAALALK RVAEKFGEVV DMSAYANRHA  120
FVHLPQWVLQ ERRERRSLDI LERKGIVTPD EPYICGVCGR KCKTNLDLKK HFKQLHETER  180
QKKLNRMKSL KGKKRQRFKE RFISGNHKYN EAARSIIKPK IGYGLASELR RAGVYVKTVE  240
DKPQAADWAL KRQMQHSMSR GIDWLFLVSD DKDFVEMLRR AREADLGTVV VGDWDRGLGR  300
HADLWVSWVE VENGEVLEKD LVPKRKRMSS DDGLFSVSEF DGENISIGEL DGVANELLVG  360
RNECGGMMIS VFSEDEDEWD IEEVGDEDYL LDDNEDEMIF EEEGYY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643242.10.0PREDICTED: uncharacterized protein LOC108484098
TrEMBLA0A1U8M5H30.0A0A1U8M5H3_GOSHI; uncharacterized protein LOC107934202
STRINGGorai.003G099900.10.0(Gossypium raimondii)
STRINGGorai.010G022000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-169C2H2-like zinc finger protein