PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15020_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 394aa MW: 43825.1 Da PI: 6.8791

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15020_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHe F+ea +qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Cotton_A_15020_BGI-A2_v1.0 34 KPRLKWTPDLHEXFIEAANQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.454	31	91	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-30	32	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.5E-16	33	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-21	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	36	87	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-24	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
YQHQGKNIHP ERHLFLQGGN GPGDSGLVLS TDAKPRLKWT PDLHEXFIEA ANQLGGADKA 60 TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NLHGQANNGS NKIGKMTVFP FSAVAMAGDR 120 MSEATGTHMN NLSIGPQTNK GLQIGEALQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ 180 AVLEKAQETL GRQNLGNMGL EAAKVQLSEL VSKVSNQCLN SAFPDLKDLQ GLCPQQGQTQ 240 ATPPTDCSMD SCLTSCDGSQ KEQEIHNNGI CLRTYNSTSF MEQRDHVLED RLLPQTELKP 300 FTDMKLGNDA ERRMFFADRS TSDLSMSVGL QGEKGHGSFS EGKFNGRNED QEGFKLQTVN 360 RLPYFETKLD LNVHEENDAA SSCKQFDLNG LSWN

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

YQHQGKNIHP ERHLFLQGGN GPGDSGLVLS TDAKPRLKWT PDLHEXFIEA ANQLGGADKA  60
TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NLHGQANNGS NKIGKMTVFP FSAVAMAGDR  120
MSEATGTHMN NLSIGPQTNK GLQIGEALQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ  180
AVLEKAQETL GRQNLGNMGL EAAKVQLSEL VSKVSNQCLN SAFPDLKDLQ GLCPQQGQTQ  240
ATPPTDCSMD SCLTSCDGSQ KEQEIHNNGI CLRTYNSTSF MEQRDHVLED RLLPQTELKP  300
FTDMKLGNDA ERRMFFADRS TSDLSMSVGL QGEKGHGSFS EGKFNGRNED QEGFKLQTVN  360
RLPYFETKLD LNVHEENDAA SSCKQFDLNG LSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629911.1	0.0	PREDICTED: myb-related protein 2-like
Refseq	XP_017629912.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	1e-149	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2P5YPP1	0.0	A0A2P5YPP1_GOSBA; Uncharacterized protein
STRING	Gorai.007G287500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-148	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]