PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15023_BGI-A2_v1.0
Common NameF383_07671
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 289aa    MW: 31661.8 Da    PI: 8.4773
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15023_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17216250135
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Cotton_A_15023_BGI-A2_v1.0 216 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 250
                                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.105.4E-14209247IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.9E-14210264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569210246IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15211274No hitNo description
CDDcd002021.60E-11215262No hitNo description
PfamPF003203.4E-15216250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDFLRNVSVS GEYHQPEQVL SSPCSKLGAS IDDLFPTQNT EVDVSLEWLS IFVEDCLSST  60
GNCIPVAATA APNVTTTATT TTTKPTNSAK KPHQITPPSL QKIVVPGKAR SKRKRVSTTL  120
SKTKNNPFCS WYQSLQLPNS DPLLLQQSCW LADSELIMPK KEDDNSSGMV GYSEVEESTK  180
KEGMEEEKAA AAAVVSKESI GDGNNNGVNQ QQPRRCSHCL AQRTPQWRAG PLGPKTLCNA  240
CGVRYKSGRL LPEYRPAKSP TFVSYLHSNS HKKVMEMRMS LLSSIPSEQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935018e-62BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629395.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A0B0NIP60.0A0A0B0NIP6_GOSAR; GATA transcription factor 9-like protein
STRINGGorai.007G287800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-34GATA transcription factor 4