PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15103_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 472aa MW: 51570.8 Da PI: 6.1347

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15103_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.3e-33	240	294	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Cotton_A_15103_BGI-A2_v1.0 240 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 294 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.456	237	297	IPR017930	Myb domain
SuperFamily	SSF46689	8.78E-18	238	294	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-31	239	295	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	240	295	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-9	242	293	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-20	333	379	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MKIGISSKTI NHPSFVSVTQ SGPSKGIGEP YPNAVSPIHN FPSRDLEGPS WLTGECSSLF 60 PLKKNELNSG PNSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT 120 CHQFISAVDS SKSPVVFTED LCNPYDVDHS EVVMKDLLNF PGDACDDGCF HVELHFLSDE 180 LDIAINDHGE NPRVEEIYES PQPSSKPTVG LTCNQNSASA TPSMSAAVSP ALSGPAAVHK 240 PRMRWTPELH ECFVEAVSKL DGPEKATPKG VLKLMNVEGL TIYHVKSHLQ KYRLAKYMPE 300 KKEEKKTWSS GEKKAALSIG ESDGTKNGQL GTHITEALQM QIEVQKQLHE QLELQRMLQL 360 RIEEQARYLQ KILEEQQKAG SALIPTLSLS APTDPPNQNS ELQQPFSPSA VVSASQHSES 420 KTESSSSSLP SKHKGNGFSV NECKPESSLK RFRFEDKPES AIDEAVVENP VQ

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MKIGISSKTI NHPSFVSVTQ SGPSKGIGEP YPNAVSPIHN FPSRDLEGPS WLTGECSSLF  60
PLKKNELNSG PNSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT  120
CHQFISAVDS SKSPVVFTED LCNPYDVDHS EVVMKDLLNF PGDACDDGCF HVELHFLSDE  180
LDIAINDHGE NPRVEEIYES PQPSSKPTVG LTCNQNSASA TPSMSAAVSP ALSGPAAVHK  240
PRMRWTPELH ECFVEAVSKL DGPEKATPKG VLKLMNVEGL TIYHVKSHLQ KYRLAKYMPE  300
KKEEKKTWSS GEKKAALSIG ESDGTKNGQL GTHITEALQM QIEVQKQLHE QLELQRMLQL  360
RIEEQARYLQ KILEEQQKAG SALIPTLSLS APTDPPNQNS ELQQPFSPSA VVSASQHSES  420
KTESSSSSLP SKHKGNGFSV NECKPESSLK RFRFEDKPES AIDEAVVENP VQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	240	297	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749740.1	0.0	PREDICTED: uncharacterized protein LOC107958474
Swissprot	Q949U2	1e-117	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A1U8PF00	0.0	A0A1U8PF00_GOSHI; uncharacterized protein LOC107958474
STRING	Gorai.009G120900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-90	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]