PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15519_BGI-A2_v1.0
Common NameF383_02200
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 564aa    MW: 61107.4 Da    PI: 6.6919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15519_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32218275260
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Cotton_A_15519_BGI-A2_v1.0 218 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 275
                                 8****************************************.***************85 PP
2WRKY106.51.3e-33381439159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Cotton_A_15519_BGI-A2_v1.0 381 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 439
                                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27212276IPR003657WRKY domain
PROSITE profilePS5081123.525212276IPR003657WRKY domain
SuperFamilySSF1182903.92E-25214276IPR003657WRKY domain
SMARTSM007744.1E-34217275IPR003657WRKY domain
PfamPF031061.7E-24218274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37366441IPR003657WRKY domain
SuperFamilySSF1182904.71E-29373441IPR003657WRKY domain
PROSITE profilePS5081138.939376441IPR003657WRKY domain
SMARTSM007741.3E-38381440IPR003657WRKY domain
PfamPF031068.2E-26382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEEQILASSS AAAAAASATQ HDLSASAASS GARYKLVAPA KLPISRSACI TIPPGLSPSS  60
FLESPVLLSD VKAEPSPTTG SLIKPQAVHG SVNSSTYSVT AACSNAFDER NPSCFEFRPH  120
PRSNLAPADL NHLRSEQSLQ IQGQFQTISY NSSALVKSEM AGSSNELSLS VPFHTATSVA  180
SASAEIDVDE LNQSGNSNSG MLSGQTDHRV SGSSTISDDG YNWRKYGQKH VKGSEFPRSY  240
YKCTHPNCEV KKLFERSHDG QITEIIYKGT HDHPKPQPSR RYSSGNTMSV QEERFDKVPP  300
LTGRDDKSSN MYGQMAHSIE PNNTADSSPV TANDDNVDDV DDDDPFSKRR KMDGGIDIIP  360
VVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTSA GCPVRKHIER  420
ASHDPKAVIT TYEGKHNHDV PTAKTSSHDI AGPVTVNALS RIRSEENDAI SLDLGVGISP  480
APENSSNEHQ QLHSEVVQSH HQTGGSSFKL HQVTPMTAYY GVPNGGMNQY GSREAPSEGL  540
TVDITPLNHS YAYSQTMGRI LTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37203441377Probable WRKY transcription factor 4
2lex_A4e-37203441377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619835.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0B0PWR60.0A0A0B0PWR6_GOSAR; Putative WRKY transcription factor 20-like protein
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein