PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15654_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 413aa MW: 47191.5 Da PI: 6.5779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15654_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.6e-14	227	278	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Cotton_A_15654_BGI-A2_v1.0 227 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 278 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.67E-12	225	282	No hit	No description
PROSITE profile	PS50888	16.126	226	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-16	226	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-11	227	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	227	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-11	232	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MLVTERGTQK EKKKEFKAFT STTSKLFMER LQGPINPYFL GEHLEVECLE QGFISCERLK 60 LGEEEEEEAH FSIPSFEEKM PFLQMLQSVE SPQLFAFKEP NFQTLLRLQH MKKPWELNNN 120 PFIPEMETQV QGLELESCVT HETILDLHSP VKSETKELKK SPPSSSCVEV LSSGSNQHQQ 180 KSDNCSREPN LGSSPQKIFT KSPPITRERR KRKRTKAAKN KEEVESQRMT HIAVERNRRR 240 QMNDYLNSLR SLMPPCYIQR GDQASIIAGA IDFVKELEQF LQSLEAQKRT RKVEESNNSM 300 SKPTMEIHQQ EYENGSEDGH CGEEVKAESK TGAAEVEVNV IHNHANLKIQ CSRRAGQLIQ 360 AIVTLETLRL TVLHLNITTS QASVLYSFNL KMEDDSALRS ADEIAAAVHQ IFS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MLVTERGTQK EKKKEFKAFT STTSKLFMER LQGPINPYFL GEHLEVECLE QGFISCERLK  60
LGEEEEEEAH FSIPSFEEKM PFLQMLQSVE SPQLFAFKEP NFQTLLRLQH MKKPWELNNN  120
PFIPEMETQV QGLELESCVT HETILDLHSP VKSETKELKK SPPSSSCVEV LSSGSNQHQQ  180
KSDNCSREPN LGSSPQKIFT KSPPITRERR KRKRTKAAKN KEEVESQRMT HIAVERNRRR  240
QMNDYLNSLR SLMPPCYIQR GDQASIIAGA IDFVKELEQF LQSLEAQKRT RKVEESNNSM  300
SKPTMEIHQQ EYENGSEDGH CGEEVKAESK TGAAEVEVNV IHNHANLKIQ CSRRAGQLIQ  360
AIVTLETLRL TVLHLNITTS QASVLYSFNL KMEDDSALRS ADEIAAAVHQ IFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	213	RRKRKR
2	227	238	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627767.1	0.0	PREDICTED: transcription factor bHLH67-like
TrEMBL	A0A0D2P7C1	0.0	A0A0D2P7C1_GOSRA; Uncharacterized protein
STRING	Gorai.007G113200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	5e-67	bHLH family protein