PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15701_BGI-A2_v1.0
Common NameF383_13330
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 566aa    MW: 62892.6 Da    PI: 7.8554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15701_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15379426355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 + h+  ErrRRd+iN+++  L+el+P++      K++Ka++L +A++Y+k Lq
  Cotton_A_15701_BGI-A2_v1.0 379 ELHKLCERRRRDKINEKMRALQELIPNC-----NKVDKASVLDEAIDYLKTLQ 426
                                 5699***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20373446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-21373435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-15374430No hitNo description
PROSITE profilePS5088817.809376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-13380426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAEKQTPESI PRRITAPFPN LSSMCDPNFV EHAWENDQNL IRGLSSMMPK KNFPGSVNFS  60
QSSKARIQHE GETPTVNTSK HWVADSTSTY GDPLSSIAKT NRLNHHHHEN YITSLQTGYR  120
ELLFEDGFNV ALEADQKCYD QQLLDSNIGP TNKYKNFKQS NVLDVPELVH EIPQQTMNND  180
SQLPQPQPET CIPFMRSKDK YSRIDEQSER ANCSIFLNSP ALPKSSQIPC CGVTIPRSTP  240
GLAVEEDDDL EANARSVPFA KEAKSMRLIL PDYEPEKEWV VPDEQSEAVR FNDNMRLPSS  300
RVGGTSSGLA PNTIMKGKVV EQKVASSSVC SRGASNCPVN TFERRYEDTD LSDNDELEEA  360
HETTKATPSK GSKRKRKSEL HKLCERRRRD KINEKMRALQ ELIPNCNKVD KASVLDEAID  420
YLKTLQLQVQ MMSMGTAGVY MPPMMLPASS MQHINARQLG GYSPMAMGMG MGMGMQMGLG  480
CTTATQFPSI TSLMPGIMQA RFNMLGLPRQ VLLMSPSPFA SLAATFPPQS VRTSSVSQAL  540
AAVPLSTSKD SNPTLQLKKK KCLMKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374388KRKSELHKLCERRRR
2384389ERRRRD
3385390RRRRDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5911596e-92JX591159.1 Gossypium hirsutum clone NBRI_GE26219 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631506.10.0PREDICTED: uncharacterized protein LOC108474109
TrEMBLA0A0B0MH840.0A0A0B0MH84_GOSAR; Transcription factor PIF3-like protein
STRINGGorai.007G118100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-35phytochrome interacting factor 3