PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15785_BGI-A2_v1.0
Common NameF383_29971
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 198aa    MW: 22848.4 Da    PI: 4.5977
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15785_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.35.1e-3991271128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e ++wyf+s+r         +nr+t +gyW
  Cotton_A_15785_BGI-A2_v1.0   9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLELYPHDPWELDGKALGEGNQWYFYSRRT--------QNRITGNGYW 82 
                                 79*************************999.99**************977778899******984........589******* PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 k  g +++v+++++++vg+kk Lvfy g+ p + kt+W+m+eyrl
  Cotton_A_15785_BGI-A2_v1.0  83 KPMGIEEDVINSRSKKVGMKKYLVFYIGEGPAAIKTNWIMQEYRL 127
                                 *******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-486158IPR003441NAC domain
PROSITE profilePS5100545.4519159IPR003441NAC domain
PfamPF023651.2E-2310127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGENSSVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLELYPHD PWELDGKALG  60
EGNQWYFYSR RTQNRITGNG YWKPMGIEED VINSRSKKVG MKKYLVFYIG EGPAAIKTNW  120
IMQEYRLSKS DSSSTKSSKR RGHSRVDYSK WVVCRVYERN CSEDEDDGDD DDDGTQLSCL  180
DEVFLSLDDM DEISLPFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-44516513171NO APICAL MERISTEM PROTEIN
1ut4_B5e-44516513171NO APICAL MERISTEM PROTEIN
1ut7_A5e-44516513171NO APICAL MERISTEM PROTEIN
1ut7_B5e-44516513171NO APICAL MERISTEM PROTEIN
3swm_A5e-44516516174NAC domain-containing protein 19
3swm_B5e-44516516174NAC domain-containing protein 19
3swm_C5e-44516516174NAC domain-containing protein 19
3swm_D5e-44516516174NAC domain-containing protein 19
3swp_A5e-44516516174NAC domain-containing protein 19
3swp_B5e-44516516174NAC domain-containing protein 19
3swp_C5e-44516516174NAC domain-containing protein 19
3swp_D5e-44516516174NAC domain-containing protein 19
4dul_A5e-44516513171NAC domain-containing protein 19
4dul_B5e-44516513171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472410.0KC847241.1 Gossypium hirsutum NAC domain protein NAC64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636481.11e-147PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK62e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0B0MUI11e-146A0A0B0MUI1_GOSAR; NAC domain-containing 19-like protein
STRINGGorai.008G014700.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-80xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]