PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15815_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 23858.3 Da PI: 9.4773

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15815_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n+ rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ yss Cotton_A_15815_BGI-A2_v1.0 9 KKIANTAARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSATGKLFKYSS 59 6899*********************************************96 PP
2	K-box	46.5	1.5e-16	89	172	16	99
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ L kei + +e+R+l GedL+ L+l +L+qLe+ ++ +l+++ ++K+e +l++i++l kk +el+een L++++ Cotton_A_15815_BGI-A2_v1.0 89 LESATHSVLSKEIAEKTQELRQLRGEDLQGLNLDQLKQLEKLVQGGLSQVTETKDERFLKEISTLEKKGEELKEENLILKQQM 171 45556677888998888999*************************************************************98 PP K-box 99 e 99 e Cotton_A_15815_BGI-A2_v1.0 172 E 172 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.6E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.903	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-29	2	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.05E-38	3	68	No hit	No description
PRINTS	PR00404	3.9E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	12.313	87	177	IPR002487	Transcription factor, K-box
Pfam	PF01486	9.4E-13	92	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTRQRIEIKK IANTAARQVT FSKRRRGLFK KAHELSTLCD AEIALIVFSA TGKLFKYSST 60 SMRQVIERRR LQSERIDGLE DAPSVELQLE SATHSVLSKE IAEKTQELRQ LRGEDLQGLN 120 LDQLKQLEKL VQGGLSQVTE TKDERFLKEI STLEKKGEEL KEENLILKQQ MENLPLVVRG 180 QPSEPFPHLH KSGGPPPPQG YNTSDISLTL G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-21	1	66	1	66	MEF2C
5f28_B	7e-21	1	66	1	66	MEF2C
5f28_C	7e-21	1	66	1	66	MEF2C
5f28_D	7e-21	1	66	1	66	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC155658	0.0	KC155658.1 Gossypium hirsutum MADS box protein MADS63 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017637013.1	1e-151	PREDICTED: MADS-box protein SVP-like
Refseq	XP_017637014.1	1e-151	PREDICTED: MADS-box protein SVP-like
Refseq	XP_017637015.1	1e-151	PREDICTED: MADS-box protein SVP-like
Refseq	XP_017637016.1	1e-151	PREDICTED: MADS-box protein SVP-like
Swissprot	Q9FUY6	2e-67	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	U5L218	1e-141	U5L218_GOSHI; MADS box protein MADS63
STRING	Gorai.008G017200.1	1e-141	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28283	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-61	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]