PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15843_BGI-A2_v1.0
Common NameF383_11482
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 674aa    MW: 72997.6 Da    PI: 6.1461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15843_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.8e-08267287526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 +C+ f++ G C+ Gd C +aHg
  Cotton_A_15843_BGI-A2_v1.0 267 PCPEFRK-GACPKGDACEYAHG 287
                                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1378161IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1479186IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.32682162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002682112IPR002110Ankyrin repeat
PfamPF136373.5E-883141No hitNo description
CDDcd002041.98E-1384186No hitNo description
SMARTSM002480.031117149IPR002110Ankyrin repeat
PROSITE profilePS5008810.82117152IPR002110Ankyrin repeat
PROSITE profilePS5010313.638262289IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6262288IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5267287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5267288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.019297321IPR000571Zinc finger, CCCH-type
SMARTSM0035630297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MQGFLLMCSG SKSELVPSNF TMEGELQGCK PDALSKCSVL LELAATDDLV AFKTEVEEKG  60
LDLGEASYWY GRRIGSKKMG FEERTPLMIA AMFGSIDVLN YIVGTGKIDV NRACGADGVT  120
AVHCAVAGGA SSSVQVIKLL LDASADANCV DANGNKPIDL IVPGLKSLSN SKKKVIELLL  180
KGDDVDGGLS LEEESEKTVL KKEYPVDISL PDINNGIYGT DDFRMYTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYSCVPCPE FRKGACPKGD ACEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHKP DELRPVYAST GSAMPSPRSS AVNAVDMSTL SPLAVGSPSL  360
PLPTASTPPM SPLTAASSPK SGGLWQNKVN LTPPALQLPG SRLKTAFNAR DLDLEMELLG  420
LENQLQQQKL MDEISSLSSP SCWSKEYSRL GDMQPTNLDD AFGSLDPSLL SPLHGLSVKS  480
ATPTQMQSPT ALQIRQNQLR ATYPPNHSSS LVRNPSAYGF DSSAAVAAAL MNSRSSAFAK  540
RSQSFIDRGA VTSRAGLTAP ANSATMMSSN ISDWSSPDGK LDWGIQGDEL NKLRKSASFG  600
FRNTPTPTPT PTPTPSNIDE PDVSWVNSLV KDVTPSSSGS MQQQQQQYNI GKGVRERLPP  660
WVEQMYIEQE QMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637845e-93JX963784.1 Gossypium hirsutum clone NBRI_TRANS-1012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619997.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0B0NE520.0A0A0B0NE52_GOSAR; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein