PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_15865_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 158aa    MW: 18136.7 Da    PI: 8.5971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_15865_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.5e-155101196
                                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkeg 77 
                                 f kvlt+ d  k  rl +p++ ++++   +g+  +sk   ++d++g +W +++ y +++g+    vl++GW++Fv  +g+ +g
  Cotton_A_15865_BGI-A2_v1.0   5 FSKVLTNTDIQK--RLAVPNNSLKHFeleNGN--CSKSFEVKDKNGFTWPFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQG 82 
                                 678887766665..59*******777864444..9999***************.54444443559****************** PP

                                 -EEEEEE-SSSEE..EEEE CS
                          B3  78 DfvvFkldgrsefelvvkv 96 
                                 D ++++ d + e+++++ v
  Cotton_A_15865_BGI-A2_v1.0  83 DLITLYKDVEAEASYKIEV 101
                                 *****95544555566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.0243105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15492IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-194101No hitNo description
SuperFamilySSF1019367.19E-15491IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-125101IPR003340B3 DNA binding domain
SMARTSM010191.6E-65105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKILFSKVLT NTDIQKRLAV PNNSLKHFEL ENGNCSKSFE VKDKNGFTWP FRCYVRNDGA  60
YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEAEASYKIE VQRKIKLLGK ECWYNLEPDQ  120
PTGATAQDKR KILLFGKECG YFLEPEQPTD ATGEVIQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617728.11e-116PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A2P5YSS01e-113A0A2P5YSS0_GOSBA; Uncharacterized protein
STRINGGorai.011G111100.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-11B3 family protein