PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_15951_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 182aa MW: 19971.6 Da PI: 8.4859

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_15951_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.4e-11	77	116	4	43
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 +k +rr+++NReAAr+sR+RKka++++Le +L + k Cotton_A_15951_BGI-A2_v1.0 77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEK 116 689**************************85555544333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-8	72	122	No hit	No description
SMART	SM00338	3.8E-6	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-9	78	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.41E-7	78	120	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDFPSTQFVP SRMMGTYQPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE 60 MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEKELEQ 120 AREQQGLYIG GGLEAGHLGF SGAVSPGPFV NGSSGSGLVF MLSSDSSHNI LSSASMSSQK 180 IL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616168.1	1e-104	PREDICTED: transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-47	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1U8LG52	1e-102	A0A1U8LG52_GOSHI; transcription factor TGA1-like isoform X3
STRING	Gorai.008G102300.1	2e-98	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-41	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]