PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16011_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 450aa    MW: 48993.2 Da    PI: 8.3469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16011_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-105379127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                ++++ C+++ rtG C++G++C+F+H+p
  Cotton_A_16011_BGI-A2_v1.0 53 PGEPDCSYYIRTGLCRFGATCCFNHPP 79
                                5789*********************97 PP
2zf-CCCH30.65.8e-10111130827
                                 GGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                                 ++++tGtCk+G++CkF+H++
  Cotton_A_16011_BGI-A2_v1.0 111 YYLKTGTCKFGATCKFHHPR 130
                                 8*****************96 PP
3zf-CCCH36.58e-12152176327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 + +C +++rtG+Ck+G++CkF+H++
  Cotton_A_16011_BGI-A2_v1.0 152 ETECAYYLRTGQCKFGSTCKFHHPQ 176
                                 578********************97 PP
4zf-CCCH38.22.4e-12311337127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C+f+++tG Ck+G+ C+F+H++
  Cotton_A_16011_BGI-A2_v1.0 311 PGEPECQFYMKTGDCKFGAVCRFHHPR 337
                                 5799*********************96 PP
5zf-CCCH40.73.9e-13357383127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++lC f++r+G+Ck+G++CkF+H++
  Cotton_A_16011_BGI-A2_v1.0 357 PGEPLCIFYSRYGICKFGPSCKFNHPM 383
                                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-45279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4135280IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-75479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-55780IPR000571Zinc finger, CCCH-type
SMARTSM003560.14108130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.493111131IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8111130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4111130IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338149177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6150177IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267310338IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5314339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4316338IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727356384IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10358383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5359383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEFSFGAGIP MSRTPAAGPE GTSLSPSLNQ DGMWQINLRS SETMESGPYP ERPGEPDCSY  60
YIRTGLCRFG ATCCFNHPPN RKLAITTARM KGEFPERVGQ PECQACISSL YYLKTGTCKF  120
GATCKFHHPR DTAGIAGRVS LNFLGYPLRP NETECAYYLR TGQCKFGSTC KFHHPQPTNM  180
MVSLRGSPIY PTVPSPTTSG QQSFLGGLTN WSRASFIPSP RWQGPSSYAP LILPQGMVSV  240
PSWNAYSGQL ASVSSSENLQ QTNGNNQIYG TSRPNESASA GSQALFSQFR SGSAPVGFYA  300
LQRENVFPER PGEPECQFYM KTGDCKFGAV CRFHHPRERV LPAPDCILSP IGLPLRPGEP  360
LCIFYSRYGI CKFGPSCKFN HPMGVFTFNY SASSPFEAPV HRLLGSSSGS GGINLSSEGL  420
VEAGSTKPRR LSLSENRQLS SSDDSIDTEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614341.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2P5X6U30.0A0A2P5X6U3_GOSBA; Uncharacterized protein
STRINGGorai.012G028600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1