PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16446_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 216aa    MW: 23841.9 Da    PI: 10.6704
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16446_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.7e-15146202359
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                  ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L++eN +L+ + e++  + +++
  Cotton_A_16446_BGI-A2_v1.0 146 NDRRRKRMMKNRESAARSRARKQAYTSELELEVAHLQEENAKLRRQQEKILATRDQV 202
                                 589*****************************************8877766555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-13144208IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.53146195IPR004827Basic-leucine zipper domain
PfamPF001706.8E-13147201IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-11148195No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-14148195No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
CDDcd147074.17E-20158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEEVWKDISL ASLSDHPVDS ILSTRTKNPN FPSMILLDFL ATPINKEPPT PRTSGVSSND  60
TSSTEGPAPF VPGTILSLKF GFGSACRCTE SADPIRPNLE VNARAGVPAA LSFSFSHNSG  120
FRGFGSPKAF PSFCTKRAPK SSENSNDRRR KRMMKNRESA ARSRARKQAY TSELELEVAH  180
LQEENAKLRR QQEKILATRD QVPKKNTLSR TSTAPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644481.11e-157PREDICTED: protein FD-like
TrEMBLA0A0D2TSJ51e-141A0A0D2TSJ5_GOSRA; Uncharacterized protein
STRINGGorai.009G192500.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.13e-39bZIP family protein