PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16553_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 207aa MW: 22310.6 Da PI: 8.7868

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16553_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Cotton_A_16553_BGI-A2_v1.0 49 FECQFCHRGFANSQALGGHQNAH 71 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.21E-6	47	76	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.7E-4	47	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.427	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MNSTDNNGDD EPGCGKPSSS TMKLFGFQVG ADEECPPSVQ RNVSEYRRFE CQFCHRGFAN 60 SQALGGHQNA HKRERRAKQG SFFTLHHQQQ QQLKQRFLTT GPVISPHSAR TRRLAYGRGS 120 TSMASRGGLS AAAPSLPMLT PRGPCPFHAG GGGQGQGQGQ GPFQVQNHEV GVNLTAGSSS 180 VANEVIEEDN IDLHLRLAPF NDRANGP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610372.1	1e-152	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A1U8HVI3	1e-149	A0A1U8HVI3_GOSHI; zinc finger protein 6-like
TrEMBL	A0A2P5YTE1	1e-149	A0A2P5YTE1_GOSBA; Uncharacterized protein
STRING	Gorai.006G078000.1	1e-117	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20638	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-12	C2H2 family protein