PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16830_BGI-A2_v1.0
Common NameF383_01883
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25523 Da    PI: 8.5802
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16830_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-312103197
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg
  Cotton_A_16830_BGI-A2_v1.0   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVG 84 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelall 97 
                                 ++++++++++q+++e++l+
  Cotton_A_16830_BGI-A2_v1.0  85 LLWTGNWHVCQAAVETVLR 103
                                 *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8351107IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGSLRSM PELMSPTPAS  120
DETSEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS  180
FTGKRATDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229DKKLLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5842844e-66JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623955.11e-171PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-91LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0B0PPG71e-170A0A0B0PPG7_GOSAR; LOB domain-containing 38-like protein
STRINGGorai.007G222000.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-87LOB domain-containing protein 38