PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17066_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 189aa    MW: 20270.9 Da    PI: 11.2955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17066_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.7e-2161110255
                         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr ++ +grW AeIrd +   g r r++lg+f+taeeAa+a++aa+++l+g
  Cotton_A_17066_BGI-A2_v1.0  61 SYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDAAARRLRG 110
                                 69*******.**********55...2.59************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.13E-1560119No hitNo description
PfamPF008472.6E-1461110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3061118IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2261118IPR016177DNA-binding domain
SMARTSM003802.9E-3161124IPR001471AP2/ERF domain
PROSITE profilePS5103222.87961118IPR001471AP2/ERF domain
PRINTSPR003676.2E-116273IPR001471AP2/ERF domain
PRINTSPR003676.2E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPPVLDGIAV VVGQHVLFGN KTNPPSTNRS SDGDRPGFIS VSQRFGANKR ELGSSVSVQK  60
SYRGVRKRPW GRWSAEIRDR VGRCRHWLGT FDTAEEAARA YDAAARRLRG SKAKTNFEIP  120
SFLPALASPS TSSSSSEAKK VKGKAKTVRK CAVVTSVDQL FSSDSFGGNE GKGKLGLVPT  180
ASKATTSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17621171571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604690.11e-134PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-25ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A1U8PRK81e-130A0A1U8PRK8_GOSHI; ethylene-responsive transcription factor ERF084-like
TrEMBLA0A2P5VX771e-130A0A2P5VX77_GOSBA; Uncharacterized protein
STRINGGorai.009G125700.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.18e-27ERF family protein