PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17077_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 271aa    MW: 29698.8 Da    PI: 6.9621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17077_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022107129123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++C + F ++  L  H++ H
  Cotton_A_17077_BGI-A2_v1.0 107 FSCNYCQRKFYSSQALGGHQNAH 129
                                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-6103134No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEPPKPSEPS LSETSTIISV SPAATLTTST HDNTTLKQDK QPAAEAKEEA THHQGDDDDL  60
VLDLRLSSRD QSNPELNFID CFKEDLSGEQ DSSELPPQGN ETEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RLGGGAAAAS FSAFGYPNTH PSRYSSLASL PLYGSFNKAL  180
GIQEHSMIHK PSLVPSAHVY GHNGWSRRPV DQTRAVGHVS NLQGINGTAR FQGSVGKFGP  240
ATEGMNGHWW DTVNQFNNKK DELKLDLSLK L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3514192e-65AF351419.1 Gossypium hirsutum clone JESPR181 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605866.10.0PREDICTED: zinc finger protein 1
TrEMBLA0A2P5WZA00.0A0A2P5WZA0_GOSBA; Uncharacterized protein
STRINGGorai.009G124600.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-36zinc-finger protein 1