PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17359_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 410aa MW: 45669.1 Da PI: 9.1135

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17359_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.5	4.8e-32	113	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+ Cotton_A_17359_BGI-A2_v1.0 113 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDI 195 89************************99555568889**************************************** PP EEEEE-.SS.SEE..EEEEE-S CS B3 80 vvFkld.gr.sefelvvkvfrk 99 v F++ g+ +++l++ ++r+ Cotton_A_17359_BGI-A2_v1.0 196 VSFQRGaGElGKGRLFIDWRRR 217 7769999******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-42	103	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.15E-30	110	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.36E-27	111	200	No hit	No description
Pfam	PF02362	1.4E-29	113	217	IPR003340	B3 DNA binding domain
SMART	SM01019	9.2E-23	113	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.819	113	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDFESKEEQM GSKGKLPFTH SSSSSNSSSS QYKTQLGPFG INNTRWEPHH QQMSPNWLGN 60 RYEAEEDKEA TTTTTTVPAA ATASEGNSTR VDSDSTLELR SSASGNIEKE HMFDKVVTPS 120 DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG 180 WSRFVKDKKL DAGDIVSFQR GAGELGKGRL FIDWRRRPDA PDPQVSFRHH HFPLHRSIPW 240 NPLLMRPPPT GRDHLHLSQI NPLSRNTYYG GGSNLVNPGG TMGSVFYLRS AVVSTAPQMG 300 MGMMEWQQHG GVVKPVAFES VPVVQGQAAA KRLRLFGVNM DCPISESDEY DVISTTTIAN 360 ATMAASQTRP SSTSSQHPLQ LRLYNETPLP PTDFLNPNKG KASMSLDLDI

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDFESKEEQM GSKGKLPFTH SSSSSNSSSS QYKTQLGPFG INNTRWEPHH QQMSPNWLGN  60
RYEAEEDKEA TTTTTTVPAA ATASEGNSTR VDSDSTLELR SSASGNIEKE HMFDKVVTPS  120
DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG  180
WSRFVKDKKL DAGDIVSFQR GAGELGKGRL FIDWRRRPDA PDPQVSFRHH HFPLHRSIPW  240
NPLLMRPPPT GRDHLHLSQI NPLSRNTYYG GGSNLVNPGG TMGSVFYLRS AVVSTAPQMG  300
MGMMEWQQHG GVVKPVAFES VPVVQGQAAA KRLRLFGVNM DCPISESDEY DVISTTTIAN  360
ATMAASQTRP SSTSSQHPLQ LRLYNETPLP PTDFLNPNKG KASMSLDLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-64	108	218	3	114	B3 domain-containing transcription factor NGA1
5os9_B	9e-64	108	218	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647390.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	Q8LMR9	4e-75	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A1U8LPA6	0.0	A0A1U8LPA6_GOSHI; B3 domain-containing transcription factor NGA1-like
STRING	Gorai.008G261100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	4e-75	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]