PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17367_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 452aa    MW: 48935.3 Da    PI: 8.384
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17367_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-172574255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++ GV +++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  Cotton_A_17367_BGI-A2_v1.0 25 RFVGVGQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 74
                                689******.7*********....4456*************************98 PP
2AP238.23.5e-122512911255
                         AP2  12 rgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  +rWvAeI d      ++   +lg+f+taeeAa+a+++ ++ l+g
  Cotton_A_17367_BGI-A2_v1.0 251 HQRWVAEIDD----SlQKVGLWLGTFDTAEEAARAYDETARILHG 291
                                 58******99....4456***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-112574IPR001471AP2/ERF domain
CDDcd000186.21E-192582No hitNo description
SMARTSM003804.5E-352588IPR001471AP2/ERF domain
PROSITE profilePS5103219.9682582IPR001471AP2/ERF domain
PRINTSPR003671.1E-62637IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-192682IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-272682IPR001471AP2/ERF domain
PRINTSPR003671.1E-64864IPR001471AP2/ERF domain
PROSITE profilePS5103214.025231299IPR001471AP2/ERF domain
SMARTSM003804.2E-17247305IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-14249300IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-19249299IPR001471AP2/ERF domain
PfamPF008471.8E-6251287IPR001471AP2/ERF domain
CDDcd000184.79E-19253299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MASGASTGAD ELGRRMKPSS RGHHRFVGVG QRPSGRWVAE IKDSLQKVRL WLGTFDTAEE  60
AARAYDDAAR ALRGSNARTN FELPSPQLAS SSSTNRLIFD NLRPFSSEKA CGSDTGGLLV  120
GALSKLLDAG KGHGVLSAAN SAGLQLSVAS DLPLSNKNLG LESGNMNLVQ GSSKPDLAIN  180
HDQAYDGQSA VGQIGVQWHQ LKSQPTSMAS SKWSNEPSFE ALWDSQMTLS PLNGLFNIST  240
SITATSTSRG HQRWVAEIDD SLQKVGLWLG TFDTAEEAAR AYDETARILH GANAHTNFEL  300
PQSASNSSVN RVSFDNIRKT CRDNAYKYWH IDDGFWSQAI GCGARPRPRV SPSTSNSHCH  360
SDAASCTPYV PTVSQQGSST TQQFPEEVQT MKSNVSNIMT QMKQMNQTLC NIQRMLEPMM  420
QLQQRSQRQF QFVGGRGSHV GAGGGKENSP PQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1323811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716453.10.0PREDICTED: uncharacterized protein LOC107929521
TrEMBLA0A1U8LSR50.0A0A1U8LSR5_GOSHI; uncharacterized protein LOC107929521
STRINGEOY237957e-78(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3566122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-18related to AP2 11