PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17419_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 167aa MW: 18948.8 Da PI: 8.3277

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17419_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	183.5	1.1e-56	7	150	5	159
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a+ + + +++ + ++ e+ +++l s + Cotton_A_17419_BGI-A2_v1.0 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAASQSLSWQDI--QAPNNAIED---YRRDLGSSSK 84 579**************************************9998877655555542..222223333...3334444444 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++++ + ++ l++n +ee v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aakn Cotton_A_17419_BGI-A2_v1.0 85 CSHNKLSMRP--PLPNNATEERV----VNRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 150 4444444444..47778777766....89****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.3E-61	9	151	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-6	104	148	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSSCIEVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAASQSL 60 SWQDIQAPNN AIEDYRRDLG SSSKCSHNKL SMRPPLPNNA TEERVVNRPP EKRQRVPSAY 120 NRFIKEEIQR IKANNPDISH REAFSTAAKN VRKCMVVFEN FDMKLWI

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643924.1	1e-112	PREDICTED: axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	2e-67	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2P5QMM9	1e-110	A0A2P5QMM9_GOSBA; Uncharacterized protein
STRING	Gorai.010G062900.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-70	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]