PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17618_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 215aa MW: 24668.4 Da PI: 6.0916

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17618_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +++ + +ps+++++e+A++l ++e++V++WFqNrRa+ k+ Cotton_A_17618_BGI-A2_v1.0 91 RQRWTPTALQLQILENIYKQgTGTPSKQKIKEIASELeqhgPISETNVYNWFQNRRARSKR 151 89***************99************99999***************97 PP
2	Wus_type_Homeobox	99.8	2e-32	90	152	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPt+ Q++iLe++yk+G+ tP+k++i++i++eLe++G i+++NV++WFQNr+aR+++k Cotton_A_17618_BGI-A2_v1.0 90 ARQRWTPTALQLQILENIYKQGTGTPSKQKIKEIASELEQHGPISETNVYNWFQNRRARSKRK 152 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-17	87	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.479	87	152	IPR001356	Homeobox domain
SMART	SM00389	2.7E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-18	90	154	IPR009057	Homeodomain-like
CDD	cd00086	4.51E-13	91	152	No hit	No description
Pfam	PF00046	2.5E-18	91	151	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEWENQEMQH HHQQGEDYLQ YQIQNEVCGK VMTDEQVEEL RKQIVAYSAI SEQLAELHKS 60 MSAHHDFTGI RLGNLYCDPI SASVGHKITA RQRWTPTALQ LQILENIYKQ GTGTPSKQKI 120 KEIASELEQH GPISETNVYN WFQNRRARSK RKLQSSTDSV NAETDVSTKE KKTKPVDPDF 180 ITNISQGVES FYFQADISRG YDSYNNLAEQ FGLLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589236	2e-89	JX589236.1 Gossypium hirsutum clone NBRI_GE23895 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614916.1	1e-162	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-61	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1U8LGE1	1e-160	A0A1U8LGE1_GOSHI; WUSCHEL-related homeobox 8-like
TrEMBL	A0A2P5YGX1	1e-160	A0A2P5YGX1_GOSBA; Uncharacterized protein
STRING	Gorai.004G038300.1	1e-155	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-61	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]