PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17661_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 188aa    MW: 21841.8 Da    PI: 8.1975
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17661_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.8e-34221232103
                                 HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                 Fl k+y +le         ++e+k+++sw+++gn f+v+ +++f++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++      
  Cotton_A_17661_BGI-A2_v1.0  22 FLLKTYALLEeaeegggggEKEYKKIVSWNDEGNGFIVWSPTDFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR------ 98 
                                 99********77666666666****************************************************9998...... PP

                                 TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkkse 103
                                    weFkh++Fk+g +++l +i rkkse
  Cotton_A_17661_BGI-A2_v1.0  99 ---WEFKHEKFKRGYEHMLVEITRKKSE 123
                                 ...**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3514115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-4218120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-2719120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-2922120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-96981IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-98294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEDPNYQNNK SKSLVTKGTA PFLLKTYALL EEAEEGGGGG EKEYKKIVSW NDEGNGFIVW  60
SPTDFSDLTL PRYFKHNNFS SFIRQLNTYG FKKTSSKRWE FKHEKFKRGY EHMLVEITRK  120
KSEATTAFLK SNCGDEDNMM MKNGNQQTLM EENENLRKEK MELETQIAQF KALEIKLLDC  180
IAQHMGPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-15191201104Putative transcription factor
5d5x_B1e-15191201104Putative transcription factor
5d5x_E1e-15191201104Putative transcription factor
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486180.0KJ748618.1 Gossypium hirsutum HSF15 (HSF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610521.11e-139PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_017621583.11e-139PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A1U8HW301e-121A0A1U8HW30_GOSHI; heat stress transcription factor B-2a-like
STRINGGorai.006G087100.11e-120(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-35heat shock transcription factor B2A