PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17671_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 547aa    MW: 62780.1 Da    PI: 6.9838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17671_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-18325421296
                                 EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                 +k+l++sdv+++gr+vlpk+ ae +   ++ +e+++++++d  s+  W++k+++  ++ks++yvl+ ++ +Fvk+ngL +gD+
  Cotton_A_17671_BGI-A2_v1.0 325 KKELKNSDVGSLGRIVLPKRDAEVNlpPLSDKEGIQVMIKDvYSNHMWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLGTGDS 406
                                 6899******************999**555568899*****77889******99888888889999.**************** PP

                                 EEEEE-SSSEE..EEEE CS
                          B3  80 vvFkldgrsefelvvkv 96 
                                 ++++  ++++++l++++
  Cotton_A_17671_BGI-A2_v1.0 407 LTLY--EDESKNLYFSI 421
                                 ****..56888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-23318423IPR015300DNA-binding pseudobarrel domain
CDDcd100178.44E-21323423No hitNo description
SuperFamilySSF1019364.58E-20324421IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-21324425IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221324425IPR003340B3 DNA binding domain
PfamPF023623.6E-15326422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRGVLCRISP RLGPHLNQRW RQHYLKHTHW SDGYPETTFL RPLVSQPTTP LAISRYFTLV  60
VSLLSFYLQF HGLFLSPQPI PLHHLTRFSC FFHTWTHPNG SILHPHDLIE PHFVLTQNRK  120
EEHTQSSALS STFSDRNQPC NPLDSSSSHC TFVLMENSYI PLFSTTATSS TTPITTTTTT  180
HSPSNMDWSQ NSDFSMFEPM NSQFQHPSQL LSPNQSLQFP YNHSIEQAPV YPFFTGQKGF  240
EFGVCKEQER RTNDPYRTRL ARINRKLARQ RSLQRNANSG ASTQVDARRL INSGADTDTN  300
KNKDTKKDLY RFCTADNKRL RVLLKKELKN SDVGSLGRIV LPKRDAEVNL PPLSDKEGIQ  360
VMIKDVYSNH MWTLKYKFWS NNKSRMYVLE NTGDFVKQNG LGTGDSLTLY EDESKNLYFS  420
ITKVATVAVE SSSNQQYYHN VNNNGEEGND NSNNMYLPFT SQSKDDEAAS LELFMEQQEP  480
NDFIMTLPMD STYGSHTMFP EETRHLPNNV DQMPSLSRSV DDISINFDDC YGGLDMLPEA  540
NQYNFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-513144213110B3 domain-containing transcription factor LEC2
6j9c_D1e-513144213110B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841651e-167JX584165.1 Gossypium hirsutum clone NBRI_GE17392 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609007.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like isoform X2
TrEMBLA0A1U8HZH00.0A0A1U8HZH0_GOSHI; B3 domain-containing transcription factor LEC2-like
STRINGGorai.006G087600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-48B3 family protein