PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_17716_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARR-B

Protein Properties

Length: 197aa MW: 21837.4 Da PI: 10.0428

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_17716_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.3	1.7e-08	59	87	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 +P+++l+ m+v+gL +e v+SHL kY+l Cotton_A_17716_BGI-A2_v1.0 59 DVPRKVLDPMNVEGLKREIVASHLHKYKL 87 69*************************97 PP
2	Response_reg	24.9	1e-09	5	57	24	75
EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS Response_reg 24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75 + v ++ +++ al++l+e++ +Dl+++ ++mp+md+++ll+ e++lp+i Cotton_A_17716_BGI-A2_v1.0 5 SAVSTTNQATTALKMLRENRnrYDLVITGVNMPDMDAFKLLELVGL-EMDLPVI 57 67999*********998889****************987633.3356665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00072	1.3E-4	4	57	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	2.2E-8	5	57	No hit	No description
CDD	cd00156	4.16E-6	7	57	No hit	No description
SuperFamily	SSF52172	3.27E-7	8	57	IPR011006	CheY-like superfamily
Gene3D	G3DSA:1.10.10.60	3.3E-7	58	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MFSFSAVSTT NQATTALKML RENRNRYDLV ITGVNMPDMD AFKLLELVGL EMDLPVIKDV 60 PRKVLDPMNV EGLKREIVAS HLHKYKLYLG LSSVVALGSK DPSYLRIGPL DGFGYFCTLT 120 RPGRISNASL PSYQPGGMFG RLNSSTTLSL HGISFSVIQP GHSQTSINLI NGSKKIQLIV 180 YQQTRIKMEL CFKGSQH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750321.1	5e-69	PREDICTED: two-component response regulator ORR22-like
TrEMBL	A0A2P5X145	5e-75	A0A2P5X145_GOSBA; Uncharacterized protein
STRING	XP_006436079.1	4e-50	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1981	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	6e-22	response regulator 10