PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17824_BGI-A2_v1.0
Common NameF383_18975
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 472aa    MW: 49938.6 Da    PI: 6.6262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17824_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-124368227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                +++ C +++rtG+C yG++C+F+H++
  Cotton_A_17824_BGI-A2_v1.0 43 DEADCIYYLRTGFCGYGSKCRFNHPR 68
                                6799********************96 PP
2zf-CCCH38.42e-1290114327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 ++ C++++rtG Ck+G++Ck++H++
  Cotton_A_17824_BGI-A2_v1.0  90 QPVCQYYMRTGACKFGASCKYHHPK 114
                                 689********************96 PP
3zf-CCCH33.47.5e-11135159226
                                 -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 ++++C+++ +tG+Ck+G +CkF+H+
  Cotton_A_17824_BGI-A2_v1.0 135 GEKECSYYVKTGQCKFGTTCKFHHP 159
                                 7899********************8 PP
4zf-CCCH39.21.2e-12295321127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C+++++tG CkyG++C+++H+p
  Cotton_A_17824_BGI-A2_v1.0 295 PGQPECQYYMKTGRCKYGSSCRYHHPP 321
                                 5789*********************97 PP
5zf-CCCH27.55.3e-09344367427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 + C ++ + G Ck+G+ C+F H++
  Cotton_A_17824_BGI-A2_v1.0 344 PTCTHYTQRGMCKFGAACRFDHPM 367
                                 78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.4E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-94368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6187115IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-787114IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1090114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-690114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-592113IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6135161IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4139158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131294322IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7294321IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-10296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5300321IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892340368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5344370IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5344367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4346365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERDPESDPQ PEWNTQGPET GLEEPVCRLG LEGGSESYPE RPDEADCIYY LRTGFCGYGS  60
KCRFNHPRDR AGVMGAGRGG VGEYPERAGQ PVCQYYMRTG ACKFGASCKY HHPKQGGGSV  120
SSVPLNYYGY PLRPGEKECS YYVKTGQCKF GTTCKFHHPA PPAMQVPAPS PAPQVAPAPA  180
PTPMPAPTMY STVQSPSGPS SQQYGVVMAR PPLMPGSYVQ GPYGPLLLSQ GVPSWNPYPG  240
PVGYGTQPTV PSSSTFGATP LSPSATAYTG SHQFVPSSFE PSSNIQEEVS FPERPGQPEC  300
QYYMKTGRCK YGSSCRYHHP PEVFAPKADV ILSPLGLPLR PGAPTCTHYT QRGMCKFGAA  360
CRFDHPMGTL SYSPSASSLA DMPVAPYPVG TTIGTLAPSS SSSELRPELL SGSSKDPAPA  420
LMSSSVSASS EPVGSVFSEG APVPHSTTQQ SSWSSAPSTG GGSDDDEPHT SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642683.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-149C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0B0MC140.0A0A0B0MC14_GOSAR; Uncharacterized protein
STRINGGorai.002G027000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]