PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18181_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 297aa    MW: 33465.3 Da    PI: 5.1052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18181_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-31114170258
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                 dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+ve+s+++ ++++itYeg H h
  Cotton_A_18181_BGI-A2_v1.0 114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPRCNAKKQVEKSRDEADTLIITYEGLHLH 170
                                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.704108173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-29110170IPR003657WRKY domain
SuperFamilySSF1182901.7E-25111170IPR003657WRKY domain
SMARTSM007744.2E-34113172IPR003657WRKY domain
PfamPF031061.8E-24114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEGGEKDDW VDDGSQEELV RELLDEESLF FVLSQGTIQP KAITSEEEVS KQRLSNVYSG  60
PRIEDIENAL SSVSNWKDQP QLTTRIKSML ERNLSKIESK YTLKVRSCGN GMADDGYKWR  120
KYGQKSIKNS PNPRSYYKCT NPRCNAKKQV EKSRDEADTL IITYEGLHLH FVDPYFPPLN  180
GQPFQHDNNA PTKKPKKAIS ESDESRAFGL PQTMQIQEAT TNNINSAVSL EGCPCPQEVA  240
SEGLLEDVVP WIIRNPFHNN IISSNSTSCS SSQTRSPPVS PSSLSWSPNY NPWPVFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191121741375WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310770.0KF031077.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614685.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1U8IQV20.0A0A1U8IQV2_GOSHI; probable WRKY transcription factor 49
STRINGGorai.012G104800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-52WRKY DNA-binding protein 49