PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18397_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 73aa MW: 8207.49 Da PI: 10.306

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18397_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	29.9	1.1e-09	2	25	19	42
RWP-RK 19 kdAAkeLgvclTvLKriCRqyGIk 42 ++AAk+++ ++Tv+K+iCR+yGI+ Cotton_A_18397_BGI-A2_v1.0 2 EKAAKKMEFSATVVKKICRKYGIQ 25 79*********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	5.6E-7	1	25	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	11	62	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MEKAAKKMEF SATVVKKICR KYGIQSMEKK ISNWVESLSS NDPKERARAK KEIKNLQGEI 60 AKFGEGSSKL GDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475904.1	1e-37	PREDICTED: uncharacterized protein LOC105792067
Refseq	XP_016716198.1	6e-40	PREDICTED: protein RKD1-like
TrEMBL	A0A0D2R7U7	2e-36	A0A0D2R7U7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LRZ5	1e-38	A0A1U8LRZ5_GOSHI; protein RKD1-like
TrEMBL	A0A2P5SMI5	1e-35	A0A2P5SMI5_GOSBA; Uncharacterized protein
STRING	Gorai.004G198100.1	4e-37	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42