PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18477_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 483aa    MW: 53528.2 Da    PI: 6.053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18477_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.42.4e-1061004801374
                        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal....ppsetseknsse 76 
                                 l++lL+++Aea++ ++++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +s+ +  k l    p  + +e+++++
  Cotton_A_18477_BGI-A2_v1.0 100 LIHLLMAAAEALAGDNKSreLARVILVRLKELVSPNDgTNMERLAAYFTEALQGLLEGSGGGHGKHLitngPHHHRDEHHHTD 182
                                 689*********998776569***********8887669******************987665555521114455555559** PP

                        GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg..sk 155
                                  l+a++l++++sP++kf+h+taNqaIlea+ +++r+Hi+D+d+++G+QW++L+qaL sR++g  +p+lRiT+++++ sg  s 
  Cotton_A_18477_BGI-A2_v1.0 183 MLSAFQLLQDMSPYVKFGHFTANQAILEATTHDRRIHIVDYDVMEGIQWASLMQALVSRKDGpqAPHLRITAISRSGSGrrSI 265
                                 ************************************************************662368*********88889999 PP

                        GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                  +++etg+rL  fA+++g pf+f+    ++ e++++++L++ +gE l++n++l+l ++  +  ++     ++L+  k+l+P++
  Cotton_A_18477_BGI-A2_v1.0 266 GTIQETGRRLVAFAASIGQPFSFHQCRLDSDETFRPSTLKLVRGEPLIINCMLHLPHFSYRAPDSV---ASFLSGAKTLNPRL 345
                                 9************************9999****************************985555555...59************ PP

                        GRAS 239 vvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                                 v++ve+e+   +++ F+ rf+++l++ysa++dslea++p ++++r  vEr++lg++i   +a   +     +e+ + W+++l 
  Cotton_A_18477_BGI-A2_v1.0 346 VTLVEEEVGPiGDGGFVGRFMDSLHHYSAVYDSLEAGFPMQNRARGLVERVFLGPRIAGSLARIYRT--GGEEESRGWSKWLA 426
                                 *******9988***************************************************98876..888999******** PP

                        GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                 ++GFk+v++s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Cotton_A_18477_BGI-A2_v1.0 427 TMGFKSVNISFANHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIWT 480
                                 *************************.******97588999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.05474460IPR005202Transcription factor GRAS
PfamPF035148.2E-104100480IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAMAIDNAFE VDFYSNSTTT SITDDSPACT WNHWGSPVVD WDSFSSDPDD FQDLIESMMD  60
DGTGFELARV AHETSNSVSI DTMVVDEETN GDEDSKGLRL IHLLMAAAEA LAGDNKSREL  120
ARVILVRLKE LVSPNDGTNM ERLAAYFTEA LQGLLEGSGG GHGKHLITNG PHHHRDEHHH  180
TDMLSAFQLL QDMSPYVKFG HFTANQAILE ATTHDRRIHI VDYDVMEGIQ WASLMQALVS  240
RKDGPQAPHL RITAISRSGS GRRSIGTIQE TGRRLVAFAA SIGQPFSFHQ CRLDSDETFR  300
PSTLKLVRGE PLIINCMLHL PHFSYRAPDS VASFLSGAKT LNPRLVTLVE EEVGPIGDGG  360
FVGRFMDSLH HYSAVYDSLE AGFPMQNRAR GLVERVFLGP RIAGSLARIY RTGGEEESRG  420
WSKWLATMGF KSVNISFANH CQAKLLLGLF NDGYRVEELA NNRLVLGWKS RRLLSASIWT  480
SPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-60864805379Protein SCARECROW
5b3h_A5e-60864804378Protein SCARECROW
5b3h_D5e-60864804378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645006.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1U8PVK20.0A0A1U8PVK2_GOSHI; nodulation-signaling pathway 2 protein-like
STRINGGorai.010G048800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]