PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18548_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 275aa MW: 29765.2 Da PI: 9.7492

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18548_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	67	127	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk++ Cotton_A_18548_BGI-A2_v1.0 67 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNK 127 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	51	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MVFSSLPVYL DPPNWQQQHN DHQQGIGGSE NPQLPPPPPH VGAGGGTVTI RPSSMADRAR 60 LAKVPQPEAA LKCPRCDSTN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC 120 RRNKKNKSST SSKTPASTQK QAEVITAHNL PQRTPHLPFM ASLQSFSQYG LGNIGLNYGG 180 SGQADIGFPL FEPSNGLYPF GSEGIEASSS SMVGESQFLG SMSSSSRVSQ LAPPMKTENN 240 NNKGLNPSRP QLGISENNQY WGGNSWTDIS ANHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640894.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0D2QJV7	1e-179	A0A0D2QJV7_GOSRA; Uncharacterized protein
STRING	Gorai.003G133200.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-47	OBF-binding protein 3