PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18752_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 24744.9 Da    PI: 5.9921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18752_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-194291255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                 ykGVr++  +g+WvAeIr+p   + r  r +lg+f+ta eAa  ++aa++kl+g
  Cotton_A_18752_BGI-A2_v1.0 42 TYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTALEAAMTYDAAARKLYG 91
                                69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-3041101No hitNo description
SuperFamilySSF541711.05E-2042100IPR016177DNA-binding domain
PfamPF008477.4E-134291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3042100IPR001471AP2/ERF domain
PROSITE profilePS5103222.014299IPR001471AP2/ERF domain
SMARTSM003804.9E-3542105IPR001471AP2/ERF domain
PRINTSPR003672.7E-94354IPR001471AP2/ERF domain
PRINTSPR003672.7E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSASAMGGPG SGEKKQVKRR AQASSRKGCM RGKGGPENAL CTYKGVRQRT WGKWVAEIRE  60
PNRGSRLWLG TFDTALEAAM TYDAAARKLY GSDAKLNLPH LCVNSRFPPP PNTQVAPRGN  120
QPLNPTTSSS NSPIIIRVDE VTPVSNSESD MSQGNMVENN AKFGQNQEEI GGFWENMTMN  180
LPVLDDSIWA EAVMSLDFPV MDDPSIFNTS LVDTTGWDAL QTPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-174399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605307.11e-168PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ24e-55DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U8PEC91e-166A0A1U8PEC9_GOSHI; dehydration-responsive element-binding protein 2D-like
STRINGGorai.009G271400.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]