PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18863_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 189aa    MW: 21938.5 Da    PI: 8.7389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18863_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.4e-1267155181
                                 EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                 f+k+lt  dv+++ +rl++ k  +e+        +++ e+++ ++++d +g+++ ++++ + ++  +vl++GW +F+ ++ L 
  Cotton_A_18863_BGI-A2_v1.0  67 FEKQLTETDVNSKqCRLSINKVDVENAvmpllkeEENVEKGIRVKVYDANGKEFPMTFKLWAHK-LHVLKEGWIGFCTDHALL 148
                                 89*******99888**********766****9996677899*****************999997.689*************98 PP

                                 .TT-EEE CS
                          B3  76 .egDfvv 81 
                                    Df+ 
  Cotton_A_18863_BGI-A2_v1.0 149 aHQDFLK 155
                                 5667765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023629.2E-867157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-1467171IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-1167157No hitNo description
SuperFamilySSF1019361.88E-1367170IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQKKAKKID HEEYKEIYGA ALCISSFKHL ILSPENAMNL QASLQATIDI PRVPSLNGLI  60
GRCSQPFEKQ LTETDVNSKQ CRLSINKVDV ENAVMPLLKE EENVEKGIRV KVYDANGKEF  120
PMTFKLWAHK LHVLKEGWIG FCTDHALLAH QDFLKLWVFR NLHTEDLCFF ITSRRLQEFQ  180
LIKKRRLNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644152.11e-140PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A2P5YR191e-137A0A2P5YR19_GOSBA; Uncharacterized protein
STRINGGorai.010G075000.11e-134(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-24B3 family protein