PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18898_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 884aa    MW: 99683.4 Da    PI: 8.5896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18898_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07464485426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                  +Cr++++ G C yG++CkF H 
  Cotton_A_18898_BGI-A2_v1.0 464 QICRYYSQ-GRCYYGENCKFLHE 485
                                 58******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.304.0E-892140IPR003034SAP domain
SuperFamilySSF689065.31E-794140No hitNo description
PfamPF020372.4E-9105139IPR003034SAP domain
SMARTSM005135.8E-5105139IPR003034SAP domain
PROSITE profilePS5080010.046105139IPR003034SAP domain
Gene3DG3DSA:4.10.1000.102.3E-8460489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014460487IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4461486IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7462485IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5464485IPR000571Zinc finger, CCCH-type
PROSITE profilePS51349111.371518877IPR012133Alpha-hydroxy acid dehydrogenase, FMN-dependent
Gene3DG3DSA:3.20.20.707.0E-150523876IPR013785Aldolase-type TIM barrel
SuperFamilySSF513959.77E-101523872No hitNo description
CDDcd028092.55E-154527869No hitNo description
PfamPF010709.4E-133533873IPR000262FMN-dependent dehydrogenase
PROSITE patternPS005570770776IPR008259FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MAISDSDPES SQDYNEIFEE KDCCNNSESD PDYHLGTDSS YSNDKDTSTK FHNFFSFLLV  60
FVYICSLAKH SNFSNVKDPE LGMDFSHIDD KSYENVQNII KDGRLEKVKV DECKVYLRRN  120
GLRLSGNKDV LIQRIKEHLE ISNGGGEKKY PLSSFVVNCT GDACTGDVVM FEQNVYEMFN  180
IASQSASGPP CGTRIVVGRI VKESYGSAKQ QHTFTIEVLW SKGEKPLSPL HPLLIKGNLY  240
RLKTLRQRWK DEGERQKVLV EKHSRGSLAR SDREVLLSIV RIQEKERRKI LRSNRILKRE  300
EKNKKKSQTQ LSSTTTTKEI QPRQPSSYTN SGFIAPQHQQ SGSTVEGGHL TNQNHGSGFL  360
FDLEKLSIRS RQSVSSHNNH LRDQVPHNLV ETSGIQEVQL QKGDKIYLNS IQPNFPMDRY  420
WNLTNGRFTA NEFPETNYRR QWLRNMDHCH PATPPQRQGF LSQQICRYYS QGRCYYGENC  480
KFLHEPRELH VAEERRAKGN SRKPESLNII LLFQETRIMT GEPVNVNEFR ELARQALPKM  540
YYDFYTGGAE DQCTLKENEE AFRRIIIQPR ILRNVRCIDL STTVLGYNIS MPVMIAPTSL  600
QKLANPEGEI ATARAASACN TIMVLSTSST YSLEEVAACC DAIRFFQLYV YKRRDISAKL  660
VQRAENNGYK AIVLTVDSPR LGRREADVKN KLVVPLLKNL EGLLPTKFVS DEKGSGLAAL  720
ASGTLDASFC WEDITWLKSI TNLPILIKGV LTREDAIKAL EVGVDGMIVS NHGGRQLDYS  780
PATISVLEEV VDAVGGKVPV LVDGGIRRGT DIFKALALGA QAVLVGRAVV YGLAAKGEKG  840
VNRVLEMLKE ELELTMALSG CCSVKEISRS HVRTKHDQQL RSML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gyl_A1e-1455228772359GLYCOLATE OXIDASE
1gyl_B1e-1455228772359GLYCOLATE OXIDASE
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5769682e-80JX576968.1 Gossypium hirsutum clone NBRI_GE8699 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5RR280.0A0A2P5RR28_GOSBA; Uncharacterized protein
STRINGGorai.011G062300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29033