PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_18920_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 246aa MW: 28392.6 Da PI: 5.7621

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_18920_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.8	1.4e-41	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 aCaaCk++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++k+l++ e+++am+++v++++ara+dPv G++++i++l Cotton_A_18920_BGI-A2_v1.0 14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQSDARANDPVGGCYRIIQEL 96 7******************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q+e ++ael+l+ ++ Cotton_A_18920_BGI-A2_v1.0 97 QRQIEYSQAELDLVFNQ 113 *********988665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.879	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-38	14	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSISRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFQNAHKLF GVSNITKIIK 60 NLNPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV FNQLAICRAQ 120 AAQQQHSDLT LCCDMINPQD PLNSYNSNYY YVQEPHEELF AVNDNNQQHQ LQENYDHSWG 180 IQESTTALST LNIKQSFMKQ SEHNDVHEDE VKHDYGIACE RHEMKFENDD IVERRFVPST 240 QLVMSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-30	8	114	5	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-30	8	114	5	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629172.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	2e-65	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8IK25	0.0	A0A1U8IK25_GOSHI; LOB domain-containing protein 22-like
STRING	Gorai.011G064500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-67	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]