PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18953_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 389aa    MW: 43277.1 Da    PI: 4.7637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18953_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19119169155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Cotton_A_18953_BGI-A2_v1.0 119 SQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 169
                                 78********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-22119179IPR016177DNA-binding domain
CDDcd000181.10E-32119178No hitNo description
PfamPF008478.7E-12119169IPR001471AP2/ERF domain
PROSITE profilePS5103223.947120177IPR001471AP2/ERF domain
SMARTSM003801.9E-36120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32120178IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCGGAIISDF IGPVRSRRLT ADYLWPDLRK SQSKKASSNR YSKPAIDFTD NFEADFQDFK  60
DDESDIEDYD VDDVLADARP FAFSATKKAS STVSHGSNSV KSVEFKGQAE KSAKRKRKSQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DSEARRIRGK KAKVNFPDEM  180
PRTSPKRVIK TNDEKPLPMS NLSPVEPNIY QNFNCLNKPE QVFYDTVGFV EEKAPMDPFA  240
YVDTVPAAVD VGLKPFGQSD NTPLYFSSDR GSTSFDCSDF GWGEHGAKTP EISSALEATM  300
EGDDFLEDAN PKKKLKPSSE NVMSIEDNSA KSLSDELLAL DDQMKYPFLE GNWDATLDAL  360
LNGDASQYGG ALTDLWSFGD FPAVAGGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201191791374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607053.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A2P5R8560.0A0A2P5R856_GOSBA; Uncharacterized protein
STRINGGorai.009G147300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-80related to AP2 12