PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18980_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 184aa    MW: 19956.8 Da    PI: 8.6104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18980_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-39131251100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearar 70 
                                 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+al             p ++r da+ss+vyeA+ar+r
  Cotton_A_18980_BGI-A2_v1.0  13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQALqadriklsnlqelPVHQRGDAVSSMVYEANARVR 95 
                                 7*********************************************998555555444444455666**************** PP

                      DUF260  71 dPvyGavgvilklqqqleqlkaelallkee 100
                                 dPvyG+vg i++lqqq++ l+++la++++e
  Cotton_A_18980_BGI-A2_v1.0  96 DPVYGCVGAISSLQQQIDALQTQLAMAQAE 125
                                 *************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.25512126IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-4013123IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.20207.3E-41579IPR029057Phosphoribosyltransferase-like
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKESGRKQGA APPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQA  60
LQADRIKLSN LQELPVHQRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDALQTQLA  120
MAQAEVVHLR VRQTASFSHH GFGPGSPSNS GSPSSKLMGS QAKPIFDMDM VVDQASFGES  180
MWSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4791277112LOB family transfactor Ramosa2.1
5ly0_B7e-4791277112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838115e-96JX583811.1 Gossypium hirsutum clone NBRI_GE16953 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777251.11e-116LOB domain-containing protein 4 isoform X1
SwissprotQ9SHE92e-79LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B0NB741e-108A0A0B0NB74_GOSAR; LOB domain-containing 4-like protein
STRINGGorai.009G149900.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-78LOB domain-containing protein 4