PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19209_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 367aa MW: 40948.4 Da PI: 8.5643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19209_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	209	268	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k ++fpr+Y+rC++a gCpvkkkv+r+ ed++++ +tYeg+Hnhe Cotton_A_19209_BGI-A2_v1.0 209 VKDGFQWRKYGQKVTKHNPFPRAYFRCSMApGCPVKKKVQRCMEDKNFLMVTYEGQHNHE 268 58*************************99**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-30	202	268	IPR003657	WRKY domain
PROSITE profile	PS50811	26.326	204	270	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-26	205	269	IPR003657	WRKY domain
SMART	SM00774	5.3E-35	209	269	IPR003657	WRKY domain
Pfam	PF03106	5.8E-25	210	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MPFWCGRKRI PRDLTTFKVK RTTDNDGTSE SLSLLCHDKV KGVGEPHLAI SMKEANEASD 60 LGARACQRSR RVALEALGNR RMVAVKTMNV EQKGLFLKTL ADLVLMMSSG LRNPEFAEGV 120 EAELEQLQKE NAALRLMLQV MRNKYKMLSE AYFRESNSQV PTICRGLTRF DLCEDQHSHK 180 NILIPQLQLA ANSSQVFVET DPRDESHIVK DGFQWRKYGQ KVTKHNPFPR AYFRCSMAPG 240 CPVKKKVQRC MEDKNFLMVT YEGQHNHEVN PSIGQSLSSP SSSATTSISG FPNSVLDNPL 300 RSAIDLDLNL SSENSSGNGN GNDDDYNNKR SMEDHIAASL AKDPSFTLAL AAAVARSFTE 360 HPKPPTN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MPFWCGRKRI PRDLTTFKVK RTTDNDGTSE SLSLLCHDKV KGVGEPHLAI SMKEANEASD  60
LGARACQRSR RVALEALGNR RMVAVKTMNV EQKGLFLKTL ADLVLMMSSG LRNPEFAEGV  120
EAELEQLQKE NAALRLMLQV MRNKYKMLSE AYFRESNSQV PTICRGLTRF DLCEDQHSHK  180
NILIPQLQLA ANSSQVFVET DPRDESHIVK DGFQWRKYGQ KVTKHNPFPR AYFRCSMAPG  240
CPVKKKVQRC MEDKNFLMVT YEGQHNHEVN PSIGQSLSSP SSSATTSISG FPNSVLDNPL  300
RSAIDLDLNL SSENSSGNGN GNDDDYNNKR SMEDHIAASL AKDPSFTLAL AAAVARSFTE  360
HPKPPTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	208	271	13	75	WRKY transcription factor 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438465	0.0	KM438465.1 Gossypium aridum WRKY52 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647052.1	0.0	PREDICTED: WRKY transcription factor 18-like
TrEMBL	A0A2P5QT63	0.0	A0A2P5QT63_GOSBA; Uncharacterized protein
STRING	Gorai.001G037800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24693	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31800.1	9e-33	WRKY DNA-binding protein 18