PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19285_BGI-A2_v1.0
Common NameF383_16571
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 231aa    MW: 25455 Da    PI: 8.4838
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19285_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-294107199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+++p++      ++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +PvyG++g
  Cotton_A_19285_BGI-A2_v1.0   4 SCNGCRVLRKGCTENCTIRPCLqwiksSDSQANATLFLAKFYGRAGLLNLIEAGPENLRPAIFRSLLYEACGRVVNPVYGSIG 86 
                                 6*********************9998777889*************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallke 99 
                                 +++++++  +q++++++l ++
  Cotton_A_19285_BGI-A2_v1.0  87 MLWSGNWGECQAAVDAVLKGS 107
                                 *************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5963109IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTENCT IRPCLQWIKS SDSQANATLF LAKFYGRAGL LNLIEAGPEN  60
LRPAIFRSLL YEACGRVVNP VYGSIGMLWS GNWGECQAAV DAVLKGSPIT QTSSSLESVE  120
EEQPISPLKT YDIRHVFKDT KPAAAADIEK VKTRTRFKRS RTRSKRQVVD SWMSQLGNGD  180
SKEDESTFSV ETVEGSLVNH AKRGPILKFE DSSNVGLELT LALLPEATHL G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RTRSKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5855615e-47JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632242.11e-172PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA303e-82LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0B0MBH81e-171A0A0B0MBH8_GOSAR; LOB domain-containing 42-like protein
STRINGGorai.005G190300.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-78LOB domain-containing protein 42