PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19328_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 239aa    MW: 26529.3 Da    PI: 6.1256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19328_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000267496123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C k F ++  L  H++ H
  Cotton_A_19328_BGI-A2_v1.0 74 FECQYCFKEFANSQALGGHQNAH 96
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-568100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-670101No hitNo description
PROSITE profilePS5015711.40674101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEKDACDCEN GYSQAGFSVE KKLRLFGFEL NPSNSNGDSM KVCGEGDESV NSSNTISSTA  60
KEKSSMVEAD DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA KRASLNCYLQ  120
PFQSSLGFGS PWYYDSPAYA TADFTPCEES QISFSQFEQD SHFNGSHASN LYSLPSEMIP  180
FQRDSSMFTL IQDDRSRDNR PVFKPPSSTP TKQSCKSLDL QLGLGLQQST IQSSSGGGI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4340630.0KM434063.1 Gossypium hirsutum C2H2 zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633162.11e-178PREDICTED: zinc finger protein 5-like
TrEMBLA0A2P5QZU11e-177A0A2P5QZU1_GOSBA; Uncharacterized protein
STRINGGorai.005G186400.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-19zinc finger protein 5