PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19391_BGI-A2_v1.0
Common NameF383_34003
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 347aa    MW: 38966.6 Da    PI: 5.2511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19391_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11190243154
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +++ hn+ Er RR ++  a+  L  llP++s +++k+ s a i  +AveYI +L
  Cotton_A_19391_BGI-A2_v1.0 190 KKEEHNAKERIRRMKLHAAYLALGALLPSDSTGSKKRKSTALIIDRAVEYIPEL 243
                                 6889*************************85555555**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-12185254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.532189243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-10190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9190244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-7195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSLHLENLF SIPEATDEYL WPLIQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNLNGN  60
KLDPVLDLDQ GIPALLSADY TIEDNARTGD QLGTTSKFIL ESVDPNIVGE SMESVLDYPI  120
DVSLSAALED SDDIDLVPHE TSSRQHPSTN QETRDAHINA KRISSKTRGR NHRFKEGLNM  180
EDNGEGTTMK KEEHNAKERI RRMKLHAAYL ALGALLPSDS TGSKKRKSTA LIIDRAVEYI  240
PELEKEIQKL TLRKNDMLSI IKNKKSCAVL NHFQLRQPSV SVHEIIQGEF IVQICTQEYP  300
DCSFLNLLHN IEEEEGICII SASTHQVSDH GHCYHLHIQV HTYIFTY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145441e-153JX614544.1 Gossypium hirsutum clone NBRI_GE58013 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616349.10.0PREDICTED: uncharacterized protein LOC108461141 isoform X1
TrEMBLA0A0B0N8B50.0A0A0B0N8B5_GOSAR; Transcription factor protein
STRINGGorai.013G038100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.14e-17bHLH family protein