PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19635_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 389aa MW: 43196.6 Da PI: 8.9314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19635_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	143	166	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F ++ L++H+ t H Cotton_A_19635_BGI-A2_v1.0 143 FPCTACGEVFQKPHFLEQHQATkH 166 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.827	143	171	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	166	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.11E-13	168	385	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.2E-5	317	383	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAKTNFGSFF NKFLSLFILL LHLGCFIFTA KDHQKPPKKR KHWPLSPSSP SHKPHANKSL 60 SSTWSYLKRI FTSSKANCKN TIPTHPTAAP TPALTSARNS QQSLVSMVIL PETHLSETSL 120 PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI 180 VRIIFKTGWT DKVRNAEIHR ILKIHNSTKI LARFEEYREL VKAKAARNGA VVGRRDERCI 240 ADGNELLRFY CSTFMCDLGL NPLSSGICSQ QYCSVCGIIK SGFSPKMDGI STLSTSWRAH 300 MAVPEDVEEE FKFMNVKRAM LVCRVVAGRV GSEGDETNKE DGGFDSVIGR GGGNMVHHTK 360 VDEEELLVFN PRAVLPCFVI VVNLVFGSN

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAKTNFGSFF NKFLSLFILL LHLGCFIFTA KDHQKPPKKR KHWPLSPSSP SHKPHANKSL  60
SSTWSYLKRI FTSSKANCKN TIPTHPTAAP TPALTSARNS QQSLVSMVIL PETHLSETSL  120
PPPHPESDIS SDNPFSPLRN DIFPCTACGE VFQKPHFLEQ HQATKHAVSQ LLDGDSGKNI  180
VRIIFKTGWT DKVRNAEIHR ILKIHNSTKI LARFEEYREL VKAKAARNGA VVGRRDERCI  240
ADGNELLRFY CSTFMCDLGL NPLSSGICSQ QYCSVCGIIK SGFSPKMDGI STLSTSWRAH  300
MAVPEDVEEE FKFMNVKRAM LVCRVVAGRV GSEGDETNKE DGGFDSVIGR GGGNMVHHTK  360
VDEEELLVFN PRAVLPCFVI VVNLVFGSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	40	KPPKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635079.1	0.0	PREDICTED: uncharacterized protein LOC108477132
TrEMBL	A0A1U8PKM1	0.0	A0A1U8PKM1_GOSHI; uncharacterized protein LOC107960046
STRING	Gorai.001G115200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-107	C2H2 family protein