PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19707_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 102aa    MW: 11783.1 Da    PI: 7.6869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19707_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-1230993098
                                ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                          B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98
                                 ++s+ lt+ de+ r W++ ++++++ gr++ +  W++F ++n++++gD+v ++++ g+   +e+ + ++r
  Cotton_A_19707_BGI-A2_v1.0 30 AASSRSLTVIDERRRPWTFGYRVTRR-GRVLSGPHWQNFIRDNNVRVGDTVSIERNdGHgYPAEYSIEIRR 99
                                467889***************54444.45888899*******************76455566667777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.4191101IPR003340B3 DNA binding domain
SMARTSM010190.00594101IPR003340B3 DNA binding domain
PfamPF023622.5E-831100IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-93288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-93299IPR015300DNA-binding pseudobarrel domain
CDDcd100176.54E-93399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MALLQKTVEL LDLEQLTVTE PYDSEPIPNA ASSRSLTVID ERRRPWTFGY RVTRRGRVLS  60
GPHWQNFIRD NNVRVGDTVS IERNDGHGYP AEYSIEIRRN QG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632671.12e-63PREDICTED: uncharacterized protein LOC108475196
TrEMBLA0A2P5QRQ46e-52A0A2P5QRQ4_GOSBA; Uncharacterized protein
STRINGGorai.005G264300.11e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973623