PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19751_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 203aa MW: 23157.1 Da PI: 8.8826

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19751_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	88.4	1.7e-27	11	64	2	55
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55 r+g+++C+dCGn+akk+C ++RCRtCC+s+g++C+th+kstWvpa++r + q Cotton_A_19751_BGI-A2_v1.0 11 RQGNTRCEDCGNKAKKECGFMRCRTCCRSKGYQCQTHIKSTWVPAYRRHRTHPQ 64 57899****************************************987654333 PP
2	DUF702	72.8	1e-22	73	134	93	154
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ le+ ++P+ev s+a f++vrvss++d+++e+aY+t+v+i G vfkG+LydqG+++ Cotton_A_19751_BGI-A2_v1.0 73 RQNPSSGLEVGNFPAEVISPATFQRVRVSSMEDEDDEYAYRTSVNIEGRVFKGLLYDQGPHH 134 445677899999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-23	14	67	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.9E-26	17	58	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.1E-20	64	133	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	8.9E-21	85	132	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MNELRRMMML RQGNTRCEDC GNKAKKECGF MRCRTCCRSK GYQCQTHIKS TWVPAYRRHR 60 THPQISHNPT RLRQNPSSGL EVGNFPAEVI SPATFQRVRV SSMEDEDDEY AYRTSVNIEG 120 RVFKGLLYDQ GPHHSLGESS SRDQTHLHQQ QPNQIIAADP LTMATTTTTT STTVETLLPF 180 AYASPFNAFM SPSTQFFLHQ PKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694534.1	1e-151	PREDICTED: protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A1U8K1U2	1e-150	A0A1U8K1U2_GOSHI; protein SHI RELATED SEQUENCE 3-like
STRING	Gorai.013G033500.1	1e-128	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	3e-49	SHI-related sequence 7