PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19790_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 413aa    MW: 44892.9 Da    PI: 6.3805
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19790_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-10216274563
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 kr++r   NR +A rs +RK  +i+eLe+k+++L++e ++L+ +l  l+k ++ + +e+
  Cotton_A_19790_BGI-A2_v1.0 216 KRAKRIWANRQSAARSKERKMRYIAELERKIQTLQTEATSLAAQLTLLQKDSSGMSAEN 274
                                 9*************************************************999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-14212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473214277IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-10216266No hitNo description
PfamPF001702.2E-9216274IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.7E-10216267No hitNo description
CDDcd147034.17E-24217266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEKDKSPCLP PMSGRVPGFS SSGNAANTSN TISETGNLGQ TSDSNRFSHD ISKMPDNPPK  60
NLGHRRAHSE IITLPDDINF DGDLGVVGAA DGPSYSDETE DDMLSMYLDI DKFNSSSVTS  120
MFQVGKSSAM TAPNSGPSAA VSMGAGTATS GEENASAGVG SSEKPRIRHQ HSQSMDGSTS  180
IKPEMLLSGS DEVTPADSKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA  240
ELERKIQTLQ TEATSLAAQL TLLQKDSSGM SAENSELKLR LQTMEQQVYL QDSLNDALKE  300
EIQHLKVLTA QPMPNGGPMM NFASFGASQQ YIPNNHAMQA LLTAQQFQQL QIQLQKHQHQ  360
FPPHQLHQLQ QQLQLQQEHQ QQSGEMRVRG SMPSPNRRDG PSSSDVSSTA SND
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611565.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_017611566.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-145POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1U8PCW40.0A0A1U8PCW4_GOSHI; probable transcription factor PosF21
STRINGGorai.006G229500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-122bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]