PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19820_BGI-A2_v1.0
Common NameF383_21949
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 280aa    MW: 31466.9 Da    PI: 6.6729
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19820_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.24e-34143200259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  Cotton_A_19820_BGI-A2_v1.0 143 EDGYRWRKYGQKAVKNSSFPRSYYRCTTTSCNVKKRVERSFTDPSMVITTYEGQHTHP 200
                                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.7E-1005280IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.806.6E-35127202IPR003657WRKY domain
SuperFamilySSF1182901.57E-29134202IPR003657WRKY domain
PROSITE profilePS5081130.871137202IPR003657WRKY domain
SMARTSM007742.9E-40142201IPR003657WRKY domain
PfamPF031066.5E-27143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEEVLGNSSF SDYFPLQSIF DWSCEGGENM PLGFMELLGV QDLNPPLFDM GQQQAPSAVV  60
NQALNPCSTK NEGFNYQPAT PNSSSISSAS SEAVNDEPIQ VDDDQEEDQQ KTKKQLKPKK  120
TNQKRQREPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSS FPRSYYRCTT TSCNVKKRVE  180
RSFTDPSMVI TTYEGQHTHP SPIMPRSSLG GGAGSAPYHY QQHPQPFVNT LSPLNFGHNN  240
GSINAGNFHH ERRFCSPGSS LLKDHGLLQD VIPSHMLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261352021077Probable WRKY transcription factor 4
2lex_A4e-261352021077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384680.0KM438468.1 Gossypium aridum WRKY65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713291.10.0PREDICTED: probable WRKY transcription factor 23
RefseqXP_017614415.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229003e-64WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8LFB20.0A0A1U8LFB2_GOSHI; WRKY transcription factor
STRINGGorai.004G144900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-55WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]