PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19869_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 191aa MW: 20510.8 Da PI: 9.4443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19869_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.9e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H Cotton_A_19869_BGI-A2_v1.0 41 FECQYCHRGFPNSQALGGHQNAH 63 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.51E-6	37	68	No hit	No description
Pfam	PF13912	3.9E-6	40	65	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.365	41	68	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSRSASENNG AGDETGRNNQ SSKLKLFGFP VAAAPCDNRR FECQYCHRGF PNSQALGGHQ 60 NAHKRERRAK LASSFTAHHH QLFVTTGHVI TAHSFRSRPS LYARSGFTNL SPSDEHAVVF 120 RGPSPSCTPI ILRGPRPLHV VGAQPSDGPF LVVQTEVGVG STLDSLVAAD VNEEGNIDLR 180 LRLAPSGTAS T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647695.1	1e-139	PREDICTED: uncharacterized protein LOC108487866
TrEMBL	A0A2P5YPF7	1e-136	A0A2P5YPF7_GOSBA; Uncharacterized protein
STRING	Gorai.011G195500.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24706	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	3e-13	C2H2 family protein