PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20032_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 205aa    MW: 24044.9 Da    PI: 9.1451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20032_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.6e-1197188281
                                 EEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHH CS
                          B3   2 fkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkan 72 
                                 +k+l  sdv+ + +rl +p + +e+h          +k++e ++  l  +s ++ e+++++   +k+++yv t+ W++ vk n
  Cotton_A_20032_BGI-A2_v1.0  97 QKQLFFSDVNPQaSRLLIPFSQVESHeflneseveRLKNKEAIKACLVEPSMEETEINFKMwdMRKKSMYVVTTSWNSIVKNN 179
                                 688999999988799*************999999966666889999***99976666665546666778************** PP

                                 T--TT-EEE CS
                          B3  73 gLkegDfvv 81 
                                 +Lk+ D+v 
  Cotton_A_20032_BGI-A2_v1.0 180 QLKAEDVVQ 188
                                 ******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037543.0E-2075177IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.105.7E-1590203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1494202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-896200No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MELLTSEDFK NTKIQPEWTA MDYLLEVVRV DQEKMQEQTL MNKKKNGGLK RKRRIQEENN  60
KNKRPITSYP PKPMMPEGLK QHIVENMGGS NCVLVIQKQL FFSDVNPQAS RLLIPFSQVE  120
SHEFLNESEV ERLKNKEAIK ACLVEPSMEE TEINFKMWDM RKKSMYVVTT SWNSIVKNNQ  180
LKAEDVVQLW SFRVNSTLCF ALQKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644464.11e-150PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBLA0A2P5XSZ41e-146A0A2P5XSZ4_GOSBA; Uncharacterized protein
STRINGEOY235241e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM200134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.14e-13B3 family protein