PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20138_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 120aa    MW: 14031 Da    PI: 9.8163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20138_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14496190
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE...EEE-TTHHHHHHHHT--TT-E CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr...yvltkGWkeFvkangLkegDf 79
                                f+k lt  dv+k+  l +p +f++ h  +++  +++t  + d sg++W+ + + y +k+g+    v+++ W+++v++++Lk gD 
  Cotton_A_20138_BGI-A2_v1.0  4 FEKYLTEVDVNKH--LAIPSEFLQ-HlpDSQGGRTITFPVHDVSGKVWKnFGY-YIRKGGSypkPVFQNDWRRYVRDKRLKPGDK 84
                                8899988888887..9*******5.55966666889999*********84666.65555665889******************** PP

                                EEEEE-SS.SEE CS
                          B3 80 vvFkldgr.sef 90
                                ++F+++++ +++
  Cotton_A_20138_BGI-A2_v1.0 85 IIFRVERNeDNG 96
                                ****99885555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-14294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-15294IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-17288No hitNo description
PROSITE profilePS508638.8962106IPR003340B3 DNA binding domain
PfamPF023622.3E-11496IPR003340B3 DNA binding domain
SMARTSM010190.0058498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MPSFEKYLTE VDVNKHLAIP SEFLQHLPDS QGGRTITFPV HDVSGKVWKN FGYYIRKGGS  60
YPKPVFQNDW RRYVRDKRLK PGDKIIFRVE RNEDNGAPIY TIAAQKKIEL FGSFCWSSEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468654.11e-65PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2P5XQD23e-81A0A2P5XQD2_GOSBA; Uncharacterized protein
STRINGGorai.002G061900.14e-65(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-07ethylene response DNA binding factor 3