PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20714_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 189aa    MW: 21810.9 Da    PI: 8.2466
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20714_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.7e-10117163147
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                 e++ k+e  k+kNReAA r  + Kka+i+ Le +v+++ ++N ++k 
  Cotton_A_20714_BGI-A2_v1.0 117 EAAEKKELHKIKNREAAARAFEEKKAYIKWLEVEVEKFRKKNADMKR 163
                                 6778****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001704.7E-8118163IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-7121163No hitNo description
SuperFamilySSF579596.12E-6121164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQLKNEDEF CGQRAQHLDM KLLLQDDDAF ESIFFPPTLL DYNLTNINEL IDFDELHSIL  60
NEGEVNQGHD QGGSCHGSTT TMVTTAELMN VKPKLNNEQH VIKKWRTRKR LERGSKEAAE  120
KKELHKIKNR EAAARAFEEK KAYIKWLEVE VEKFRKKNAD MKRLLLVLGS SIGSDMARKQ  180
LRRTASGLL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5820772e-67JX582077.1 Gossypium hirsutum clone NBRI_GE14853 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711828.11e-134PREDICTED: uncharacterized protein LOC107925633
TrEMBLA0A2P5X7I61e-135A0A2P5X7I6_GOSBA; Uncharacterized protein
STRINGEOX951762e-46(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2810722