PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20785_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 351aa    MW: 38629.1 Da    PI: 5.7981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20785_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.9e-062432801254
                                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cotton_A_20785_BGI-A2_v1.0 243 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 280
                                 677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.087231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-12241294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.90E-6241284No hitNo description
Gene3DG3DSA:4.10.280.103.2E-9241300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAEEFQAAIC GGGGGTWWNI PTKTMFSGCN SPLYSTTIAD MGSFGWGNDM VATDDIIIKP  60
RSCYNSDNSG TNNNSSILID STLGFGLSSS DNWNQSLLRI NNQEFPMDST YECPSTLLFD  120
TDPQQQSVFN NNQSINYMSC SSLSSSPSWP KLASPLTTKQ QQQPPVGTGT LQFSNNTSFW  180
NTSATGNILP SLYEEKPNCP TLTTKTNIEE VRKNSNSKKA SNETPLKRPR LETPSPLPTF  240
KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVNVLSTP YMKQAAASIQ  300
QSTDKLKDHQ EGPKQDLRSR GLCLVPVSST FPVANETPAD FWTPTFGGTF R
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3947691e-123GQ394769.1 Gossypium hirsutum cultivar Deltapine 90 clone MONCS1792 SSR marker DC40367 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605496.10.0PREDICTED: transcription factor bHLH112
SwissprotQ94JL39e-73BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A1U8L8T60.0A0A1U8L8T6_GOSHI; transcription factor bHLH112-like
STRINGGorai.011G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.19e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]